基于TaqMan探针荧光PCR检测致泻性大肠埃希氏菌
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广东省协同创新与平台环境建设专项 (2017A040405043)


Detection for Diarrheagenic Escherichia coli (DEC) by Real-time PCR with TaqMan Probe
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    摘要:

    建立快速检测致泻性大肠埃希氏菌的(DEC)方法,根据DEC的uidA(GenBank: JQ068101.1)、bfpB(Sequence: NG_034726.1)、eaeA(GenBank: AJ579305.1)、LT(GenBank: M17873.1)、ST(GenBank: M18346.1)、Stx1(GenBank: FR875155.1)、Stx2(GenBank: AB030484.1)、ipaH(GenBank: JQ638638.1)、aggR(GenBank: Z32523.1)设计引物和探针,建立基于TaqMan探针荧光PCR检测方法。用uidA基因检测所有DEC,A体系4个基因bfpB、eaeA、LT、ST检测EPEC和ETEC,B体系4个基因ipaH、Stx1、Stx2、aggR检测EIEC、STEC和EAEC,两个体系探针的5′端分别标记FAM、VIC、TET和ROX。试验结果表明,两个体系扩增效率89.6%~102.2%,线性相关系数R2在0.965~0.999范围,可准确鉴别出25株DEC型别,而70株非DEC扩增结果阴性。本研究所建立方法的特异性强,可准确检测EPEC、ETEC、EIEC、STEC和EAEC。

    Abstract:

    Object: To establish a method for rapid detection of diarrhea-causing Escherichia coli(DEC). Methods: Primers and probes were designed based on uidA(GenBank: JQ068101.1), bfpB (Sequence: NG_034726.1), eaeA (GenBank: AJ579305. 1), LT (GenBank: M17873.1), ST (GenBank: M18346.1), Stx1 (GenBank: FR875155.1), Stx2 (GenBank: AB030484.1), ipaH (GenBank: JQ638638.1), aggR (GenBank: Z32523.1) of DEC to establish a TaqMan probe fluorescent PCR assay. Among these targets, uidA gene was used to identify all DEC, and the remaining targets are divided into two systems, A and B. A system including 4 genes(bfpB, eaeA, LT, ST) were used to detect EPEC and ETEC, B system includes 4 genes(ipaH, Stx1, Stx2, and aggR) were used to detect EIEC, STEC and EAEC. The 5' ends of the two system probes were labeled with FAM, VIC, TET and ROX respectively. Results: The amplification efficiency of the two systems was 89.6%-102.2% respectively and the linear correlation coefficient R2 was in the range of 0.965-0.999. This assay is specific to Escherichia coli(25/25), and the Real-time PCR detection showed that EPEC, ETEC, EIEC, STEC and EAEC could be identified and distinguished by system A and B while 70 non-DEC amplification results were negative. Conclusion: This new method is highly specific to E coli and can accurately distinguish EPEC, ETEC, EIEC, STEC and EAEC.

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袁慕云;许龙岩;柯碧霞;陈瑶.基于TaqMan探针荧光PCR检测致泻性大肠埃希氏菌[J].中国食品学报,2021,21(3):274-281

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  • 在线发布日期: 2021-04-19
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