鱼源荧光假单胞菌分泌蛋白的全基因组预测与功能分析
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(1.渤海大学食品科学与工程学院 辽宁锦州 121013;2.生鲜农产品贮藏加工及安全控制技术国家地方联合工程研究中心 辽宁锦州 121013)

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国家自然科学基金项目(32202141);辽宁省教育厅面上项目(JYTMS20231617)


Genome-wide Prediction and Functional Analysis of Secretory Protein of Pseudomonas fluorescens from Fish
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(1.College of Food Science and Engineering, Bohai University, Jinzhou 121013, Liaoning;2.National & Local Joint Engineering Research Center of Storage, Processing and Safety Control Technology for Fresh Agricultural and Aquatic Products, Jinzhou 121013, Liaoning)

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    摘要:

    目的:荧光假单胞菌是冷藏海水鱼的优势腐败菌,具有较强的胞外蛋白分泌能力是其导致鱼类腐败的重要因素之一。本文探究其全基因组水平胞外蛋白的组成、特征及分泌途径。方法:采用多种生物信息学分析软件对鱼源荧光假单胞菌PF08胞外蛋白分泌情况进行预测和功能分析。结果:荧光假单胞菌PF08全基因组编码的5 514条蛋白中,筛选到66个具有Sec/SPI型信号肽,定位在胞外,不具有或只有一个跨膜结构以及无GPI锚定位点的经典分泌蛋白。蛋白长度大多为101~400个氨基酸,多为小分子蛋白,且疏水性氨基酸组成所占比例最高。通过Nr数据库注释到13个菌毛蛋白、11个酶类、2个鞭毛蛋白、7个DUFs家族蛋白、17个未知功能假定蛋白及16个其它功能蛋白。通过COG分析,这些蛋白主要注释到细胞内运输、分泌和囊泡运输,细胞运动,信号转导及细胞壁、膜、生物包膜等功能类别。GO注释显示这些蛋白在生物过程、细胞成分和分子功能3个类别中均注释丰富。结论:荧光假单胞菌的经典分泌蛋白组由不同功能性质的蛋白质组成,涉及促进荧光假单胞菌的胞外定殖、生物被膜形成、分解食品组分等方面的关键蛋白,为进一步研究荧光假单胞菌对鱼类的致腐机制提供重要依据。

    Abstract:

    Objective: Pseudomonas fluorescens is a dominant spoilage bacterium in refrigerated Marine fish. Its strong ability of extracellular protein secretion is one of the important factors leading to fish spoilage. Thus, extracellular protein composition and secretion pathway under the whole genome level of P. fluorescens from fish are explored. Methods: A variety of bioinformatics analysis software was used to predict the extracellular protein secretion of P. fluorescens PF08 from fish and to analyze its function. Results: In the 5 514 proteins encoded by P. fluorescens PF08 in the whole genome, sixty-six classical secreted proteins with Sec/SPI type signal peptides, localized extracellular, with none or only one transmembrane structure and no GPI anchor site were screened. Most proteins were 101-400 amino acids, small molecular proteins, and the proportion of hydrophobic amino acids was the highest. 13 pili proteins, 11 enzymes, 2 flagellins, 7 DUFs family proteins, 17 unknown functional hypothesized proteins and 16 other functional proteins were annotated by Nr database. Further through COG analysis, these proteins were mainly annotated into the functional categories of intracellular transport, secretion and vesicle transport, cell motility, signal transduction and cell wall, membrane and biological envelope. GO annotation showed that these proteins were highly annotated in the three categories of biological processes, cell components and molecular functions. Conclusion: The secretory proteome of P. fluorescens consisted of different functional and properties proteins, involving key proteins that promote the extracellular colonization, biofilm formation, decomposition of food components, etc. It provides an important basis for further research on the spoilage mechanisms of P. fluorescens in fish.

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李秋莹,张雪婷,崔方超,檀茜倩,孙彤,励建荣.鱼源荧光假单胞菌分泌蛋白的全基因组预测与功能分析[J].中国食品学报,2024,24(9):434-442

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  • 收稿日期:2023-09-10
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  • 在线发布日期: 2024-10-21
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