嗜盐四联球菌CGMCC 3792全基因组测序和胞外多糖基因簇分析
CSTR:
作者:
作者单位:

(四川大学轻工科学与工程学院 成都 610065)

作者简介:

通讯作者:

中图分类号:

基金项目:

国家自然科学基金项目(32272280,31871787)


Whole Genome Sequencing and Exopolysaccharide Gene Cluster Analysis of Tetragenococcus halophilus CGMCC 3792
Author:
Affiliation:

(College of Biomass Science and Engineering, Sichuan University, Chengdu 610065)

Fund Project:

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    目的:嗜盐四联球菌为一种乳酸菌,其产生的高分子聚合物胞外多糖具有重要的应用价值。为探究嗜盐四联球菌产胞外多糖的分子机制,对该菌进行全基因组测序,并对其基因组和胞外多糖基因簇进行分析。方法:采用纳米孔三代测序技术对嗜盐四联球菌CGMCC 3792的全基因组进行测序,采用生物信息学方法对其进行基因预测和功能注释,并深入挖掘合成胞外多糖的相关基因,在基因水平上分析嗜盐四联球菌CGMCC 3792合成胞外多糖的分子机制。结果:嗜盐四联球菌CGMCC 3792基因组全长2 573 722 bp,编码2 633个基因。对胞外多糖生物合成途径进行分析,发现其可利用甘露糖、果糖、麦芽糖、葡萄糖和纤维二糖合成胞外多糖。通过基因组分析发现,该基因组含有1个15.4 kb的胞外多糖基因簇,其中包括起调控作用的基因epsA和epsB,决定链长的基因epsC和epsD,以及2个糖基转移酶基因和编码翻转酶的基因wzx。结论:本研究在基因水平上揭示了嗜盐四联球菌CGMCC 3792产胞外多糖的分子机制,为其工业化应用奠定了基础。

    Abstract:

    Objective: Tetragenococcus halophilus is a kind of lactic acid bacteria, the high polymer exopolysaccharide produced by it has important application value. In order to explore the molecular mechanism of exopolysaccharide produced by Tetragenococcus halophilus, the whole genome of the strain was sequenced and analyzed, which provided a theoretical basis for the production and application of exopolysaccharide from Tetracococcus halophilus. Methods: The whole genome of Tetragenococcus halophilus CGMCC 3792 was sequenced by nanopore third-generation sequencing technology, and the gene prediction and functional annotation were performed by bioinformatics method. In addition, the genes related to the biosynthesis of exopolysaccharide were further explored, and the molecular mechanism of exopolysaccharide synthesis by Tetragenococcus halophilus CGMCC 3792 was analyzed deeply at the gene level. Results: The total length of the genome of Tetragenococcus halophilus CGMCC 3792 was 2 573 722 bp, encoding 2 633 genes. The biosynthesis pathway of exopolysaccharide was analyzed, and results showed that exopolysaccharide could be synthesized from mannose, fructose, maltose, glucose and cellobiose. Through genomic analysis, it was found that the genome contained a 15.4 kb exopolysaccharide gene cluster, including the regulating genes epsA and epsB, the chain length determining genes epsC and epsD, and two glycosyltransferase genes as well as the flippase encoding gene wzx. Conclusion: This study revealed the molecular mechanism of exopolysaccharide production by Tetragenococcus halophilus CGMCC 3792 at the gene level, which laid a foundation for its industrial application.

    参考文献
    相似文献
    引证文献
引用本文

张敏,金垚,黄钧,周荣清,迟原龙,吴重德.嗜盐四联球菌CGMCC 3792全基因组测序和胞外多糖基因簇分析[J].中国食品学报,2025,(1):314-321

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:2024-01-12
  • 最后修改日期:
  • 录用日期:
  • 在线发布日期: 2025-03-05
  • 出版日期:
文章二维码
版权所有 :《中国食品学报》杂志社     京ICP备09084417号-4
地址 :北京市海淀区阜成路北三街8号9层      邮政编码 :100048
电话 :010-65223596 65265375      电子邮箱 :chinaspxb@vip.163.com
技术支持:北京勤云科技发展有限公司

漂浮通知


×
《中国食品学报》杂志社招聘编辑