Abstract:Object: To establish a method for rapid detection of diarrhea-causing Escherichia coli(DEC). Methods: Primers and probes were designed based on uidA(GenBank: JQ068101.1), bfpB (Sequence: NG_034726.1), eaeA (GenBank: AJ579305. 1), LT (GenBank: M17873.1), ST (GenBank: M18346.1), Stx1 (GenBank: FR875155.1), Stx2 (GenBank: AB030484.1), ipaH (GenBank: JQ638638.1), aggR (GenBank: Z32523.1) of DEC to establish a TaqMan probe fluorescent PCR assay. Among these targets, uidA gene was used to identify all DEC, and the remaining targets are divided into two systems, A and B. A system including 4 genes(bfpB, eaeA, LT, ST) were used to detect EPEC and ETEC, B system includes 4 genes(ipaH, Stx1, Stx2, and aggR) were used to detect EIEC, STEC and EAEC. The 5' ends of the two system probes were labeled with FAM, VIC, TET and ROX respectively. Results: The amplification efficiency of the two systems was 89.6%-102.2% respectively and the linear correlation coefficient R2 was in the range of 0.965-0.999. This assay is specific to Escherichia coli(25/25), and the Real-time PCR detection showed that EPEC, ETEC, EIEC, STEC and EAEC could be identified and distinguished by system A and B while 70 non-DEC amplification results were negative. Conclusion: This new method is highly specific to E coli and can accurately distinguish EPEC, ETEC, EIEC, STEC and EAEC.